Variant report

Variant	rs149902093
Chromosome Location	chr6:114662526-114662527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114662119..114667220-chr6:114669334..114673077,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000218089	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv464024	chr6:114489321-114837181	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv604544	chr6:114489321-114837181	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv3692910	chr6:114597419-115480580	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv528128	chr6:114597657-115471129	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv818451	chr6:114597657-115471129	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	esv3390393	chr6:114662484-114665032	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114659800-114665400	Active TSS	H1 Cell Line	embryonic stem cell
2	chr6:114660600-114662600	Active TSS	Fetal Brain Female	brain
3	chr6:114661000-114665000	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr6:114661000-114665200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:114661000-114665800	Active TSS	Brain Anterior Caudate	brain
6	chr6:114661200-114665000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:114661200-114665200	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr6:114661400-114665200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr6:114661400-114665400	Active TSS	H9 Cell Line	embryonic stem cell
10	chr6:114661400-114665600	Active TSS	Brain Angular Gyrus	brain
11	chr6:114661600-114665000	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr6:114661600-114665200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:114661800-114662600	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr6:114661800-114662600	Weak transcription	HSMM	muscle
15	chr6:114661800-114662800	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr6:114661800-114665000	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr6:114662000-114663400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
18	chr6:114662200-114662800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:114662200-114662800	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr6:114662200-114662800	Active TSS	Brain Hippocampus Middle	brain
21	chr6:114662200-114663400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:114662200-114665200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:114662200-114665400	Active TSS	Brain Substantia Nigra	brain
24	chr6:114662200-114665600	Active TSS	Brain Cingulate Gyrus	brain
25	chr6:114662400-114662600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
26	chr6:114662400-114662600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:114662400-114662600	Active TSS	Muscle Satellite Cultured Cells	--
28	chr6:114662400-114662600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:114662400-114662600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
30	chr6:114662400-114662600	Bivalent Enhancer	Fetal Brain Male	brain
31	chr6:114662400-114662600	Bivalent Enhancer	Fetal Muscle Leg	muscle
32	chr6:114662400-114662600	Bivalent/Poised TSS	Fetal Stomach	stomach
33	chr6:114662400-114662600	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr6:114662400-114662800	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:114662400-114662800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:114662400-114662800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:114662400-114662800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:114662400-114662800	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
39	chr6:114662400-114662800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
40	chr6:114662400-114663000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:114662400-114663200	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:114662400-114663200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:114662400-114663400	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:114662400-114663400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:114662400-114663400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
46	chr6:114662400-114664000	Bivalent/Poised TSS	HepG2	liver
47	chr6:114662400-114664400	Active TSS	HSMMtube	muscle
48	chr6:114662400-114665000	Active TSS	Fetal Kidney	kidney
49	chr6:114662400-114665400	Active TSS	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links