Variant report

Variant	rs1499561
Chromosome Location	chr6:119896882-119896883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1287999	1.00[AMR][1000 genomes]
rs1739729	1.00[AMR][1000 genomes]
rs2173564	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2748265	1.00[AMR][1000 genomes]
rs2748267	1.00[AMR][1000 genomes]
rs807298	1.00[AMR][1000 genomes]
rs807308	1.00[AMR][1000 genomes]
rs811081	1.00[AMR][1000 genomes]
rs9489726	1.00[AMR][1000 genomes]
rs9489730	1.00[AMR][1000 genomes]
rs9489734	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1027370	chr6:119869409-120056608	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538431	chr6:119869409-120056608	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv818452	chr6:119895316-119915332	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119896600-119897200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:119896600-119897400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:119896600-119897400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:119896600-119897400	Enhancers	HSMM	muscle
5	chr6:119896600-119897400	Enhancers	NH-A	brain
6	chr6:119896600-119897600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:119896600-119897600	Enhancers	HMEC	breast
8	chr6:119896600-119897600	Enhancers	NHEK	skin
9	chr6:119896800-119897000	Enhancers	NHLF	lung
10	chr6:119896800-119897000	Flanking Active TSS	Osteobl	bone
11	chr6:119896800-119897600	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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