Variant report
| Variant | rs807298 |
|---|---|
| Chromosome Location | chr6:120017354-120017355 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:120007933..120010561-chr6:120017242..120019389,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs1287999 | 1.00[AMR][1000 genomes] |
| rs1499561 | 1.00[AMR][1000 genomes] |
| rs1739729 | 1.00[AMR][1000 genomes] |
| rs2173564 | 1.00[AMR][1000 genomes] |
| rs2748265 | 1.00[AMR][1000 genomes] |
| rs2748267 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs807308 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs811081 | 1.00[AMR][1000 genomes] |
| rs9489726 | 1.00[AMR][1000 genomes] |
| rs9489730 | 1.00[AMR][1000 genomes] |
| rs9489734 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3447598 | chr6:119558591-120119384 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| 2 | esv3389526 | chr6:119558598-120190087 | ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| 3 | esv3442553 | chr6:119742069-120076777 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 4 | nsv1027370 | chr6:119869409-120056608 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv538431 | chr6:119869409-120056608 | Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:120017000-120017600 | Enhancers | K562 | blood |
