Variant report

Variant	rs1500077
Chromosome Location	chr12:33147226-33147227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10844421	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10844422	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11052370	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11052371	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11052375	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11052376	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11052377	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11052378	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11052379	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11052380	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11052391	0.85[AMR][1000 genomes]
rs11052407	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11052414	0.87[EUR][1000 genomes]
rs12231850	1.00[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12578228	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12579660	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12581266	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12812935	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1500053	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1500071	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1811678	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2133675	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67487821	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72640188	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1054440	chr12:32872999-33150460	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1039909	chr12:33132909-33244419	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1053849	chr12:33132909-33279169	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33140600-33164800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:33143000-33147800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:33143000-33149800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr12:33143800-33150400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:33144200-33150000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr12:33144400-33150000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr12:33145600-33147800	Enhancers	Fetal Kidney	kidney
8	chr12:33146400-33147400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr12:33146600-33147800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr12:33146800-33148000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr12:33147000-33147600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr12:33147000-33147800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:33147000-33148000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr12:33147000-33148000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr12:33147000-33148400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr12:33147200-33147600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:33147200-33147800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:33147200-33148400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links