Variant report

Variant	rs1500071
Chromosome Location	chr12:33150520-33150521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10844421	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10844422	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10844433	0.83[JPT][hapmap]
rs11052370	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052371	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052375	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11052376	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11052377	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11052378	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11052379	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11052380	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11052407	0.86[ASN][1000 genomes]
rs11052414	0.82[ASN][1000 genomes]
rs12228265	0.83[ASN][1000 genomes]
rs12230899	0.82[ASN][1000 genomes]
rs12231850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12578228	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12578415	0.85[ASN][1000 genomes]
rs12578484	0.84[ASN][1000 genomes]
rs12579660	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12581266	0.81[ASN][1000 genomes]
rs12812935	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500053	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1500065	0.84[JPT][hapmap]
rs1500077	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2133675	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs57486920	0.85[ASN][1000 genomes]
rs67487821	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72640188	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1039909	chr12:33132909-33244419	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1053849	chr12:33132909-33279169	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33140600-33164800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:33149000-33150600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr12:33149600-33150600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:33149600-33150600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:33149800-33150600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr12:33150000-33150600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr12:33150000-33150600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr12:33150000-33150600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr12:33150200-33150600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr12:33150200-33150600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr12:33150200-33150600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr12:33150200-33150600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr12:33150400-33150600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr12:33150400-33150800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr12:33150400-33153200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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