Variant report

Variant	rs1500489
Chromosome Location	chr4:45324594-45324595
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1108423	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1500490	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1500491	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1500492	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1604151	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3947624	1.00[AFR][1000 genomes]
rs41333852	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs41497647	1.00[AFR][1000 genomes]
rs4389614	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9994867	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45320400-45325600	Weak transcription	Fetal Heart	heart
2	chr4:45322800-45325400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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