Variant report

Variant	rs1500491
Chromosome Location	chr4:45318962-45318963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1500489	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1500490	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1500492	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1500495	0.84[AFR][1000 genomes]
rs1604151	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16858373	0.92[AFR][1000 genomes]
rs41333852	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs41502944	0.91[AFR][1000 genomes]
rs4389614	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56316722	0.84[AFR][1000 genomes]
rs61308768	0.89[AFR][1000 genomes]
rs73813038	0.81[AFR][1000 genomes]
rs73813044	0.89[AFR][1000 genomes]
rs73813049	0.86[AFR][1000 genomes]
rs7656155	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv878984	chr4:45191856-45321022	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45318000-45319800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:45318400-45319800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:45318600-45320400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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