Variant report
| Variant | rs56316722 |
|---|---|
| Chromosome Location | chr4:45282296-45282297 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1500491 | 0.84[AFR][1000 genomes] |
| rs1500492 | 0.88[AFR][1000 genomes] |
| rs1500495 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16858373 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41502944 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4389614 | 0.88[AFR][1000 genomes] |
| rs57338164 | 1.00[AMR][1000 genomes] |
| rs57933080 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58204296 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59366613 | 1.00[AMR][1000 genomes] |
| rs61175363 | 0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61308768 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61700072 | 1.00[AMR][1000 genomes] |
| rs73813021 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73813035 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73813038 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73813039 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73813040 | 1.00[AMR][1000 genomes] |
| rs73813042 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73813044 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73813049 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7656155 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv594104 | chr4:45105210-45665828 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv878984 | chr4:45191856-45321022 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv461351 | chr4:45224500-45283866 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | nsv594106 | chr4:45224500-45283866 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:45281800-45282400 | Enhancers | Stomach Mucosa | stomach |
