Variant report

Variant	rs1503421
Chromosome Location	chr11:121565824-121565825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11600268	1.00[ASN][1000 genomes]
rs1503420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs509689	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs511489	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs528275	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs609414	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs668374	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130349	1.00[ASN][1000 genomes]
rs7943022	1.00[ASN][1000 genomes]
rs7951439	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121559000-121566600	Weak transcription	Pancreas	Pancrea
2	chr11:121559200-121567000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:121559800-121566800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:121560200-121566800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:121560400-121566600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:121560400-121566800	Weak transcription	NH-A	brain
7	chr11:121560400-121567000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:121560400-121567400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:121561000-121570200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:121563200-121566800	Weak transcription	Osteobl	bone
11	chr11:121563400-121566600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:121563400-121566600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:121563400-121566600	Weak transcription	Brain Anterior Caudate	brain
14	chr11:121563400-121566600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:121563400-121566600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:121563400-121566600	Weak transcription	HepG2	liver
17	chr11:121563400-121566800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:121563400-121566800	Weak transcription	HSMMtube	muscle
19	chr11:121563400-121567000	Weak transcription	HSMM	muscle
20	chr11:121563600-121566800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:121564000-121566600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:121565400-121566800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:121565400-121571000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr11:121565600-121566000	Enhancers	Fetal Brain Male	brain
25	chr11:121565600-121566600	Weak transcription	Brain Angular Gyrus	brain
26	chr11:121565600-121566600	Enhancers	Brain Substantia Nigra	brain
27	chr11:121565800-121566000	Enhancers	Brain Hippocampus Middle	brain
28	chr11:121565800-121566600	Enhancers	Fetal Heart	heart

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