Variant report

Variant	rs7951439
Chromosome Location	chr11:121558588-121558589
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10502262	1.00[CHB][hapmap]
rs11824861	1.00[ASN][1000 genomes]
rs1503420	0.81[EUR][1000 genomes]
rs1503421	0.81[EUR][1000 genomes]
rs1699105	1.00[CHB][hapmap]
rs509689	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs511489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs515954	1.00[ASN][1000 genomes]
rs528275	1.00[EUR][1000 genomes]
rs57942381	1.00[ASN][1000 genomes]
rs609414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs668374	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121556600-121558600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:121557200-121558600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:121558000-121558600	Enhancers	HSMM	muscle
4	chr11:121558000-121559400	Enhancers	Fetal Kidney	kidney
5	chr11:121558200-121558600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:121558200-121558600	Enhancers	HSMMtube	muscle
7	chr11:121558200-121560400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:121558400-121558600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:121558400-121558600	Enhancers	Osteobl	bone
10	chr11:121558400-121559200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:121558400-121559200	Enhancers	Primary hematopoietic stem cells	blood
12	chr11:121558400-121559200	Enhancers	Colon Smooth Muscle	Colon
13	chr11:121558400-121559400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr11:121558400-121559400	Enhancers	Fetal Heart	heart
15	chr11:121558400-121559400	Enhancers	Fetal Stomach	stomach
16	chr11:121558400-121559600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:121558400-121560000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr11:121558400-121560200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr11:121558400-121560400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr11:121558400-121560600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr11:121558400-121560800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:121558400-121560800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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