Variant report

Variant	rs11824861
Chromosome Location	chr11:121556780-121556781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11218299	1.00[EUR][1000 genomes]
rs11218402	1.00[EUR][1000 genomes]
rs12270116	1.00[EUR][1000 genomes]
rs12293525	1.00[EUR][1000 genomes]
rs17125818	1.00[EUR][1000 genomes]
rs2851114	1.00[EUR][1000 genomes]
rs515954	1.00[ASN][1000 genomes]
rs57942381	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126804	1.00[EUR][1000 genomes]
rs73585679	1.00[EUR][1000 genomes]
rs7951439	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121552800-121558400	Weak transcription	Osteobl	bone
2	chr11:121553000-121558200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:121553000-121558200	Weak transcription	HSMMtube	muscle
4	chr11:121556200-121557000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:121556600-121558600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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