Variant report

Variant	rs11218402
Chromosome Location	chr11:121649010-121649011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11218386	1.00[AMR][1000 genomes]
rs11824861	1.00[EUR][1000 genomes]
rs12270116	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293525	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17125818	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs481880	1.00[AMR][1000 genomes]
rs57942381	1.00[EUR][1000 genomes]
rs57956228	1.00[AMR][1000 genomes]
rs583156	1.00[AMR][1000 genomes]
rs7126804	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73585679	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121648200-121651600	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:121649000-121649200	Enhancers	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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