Variant report

Variant	rs17125818
Chromosome Location	chr11:121635809-121635810
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11218402	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11824861	1.00[EUR][1000 genomes]
rs12270116	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12293525	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2851114	1.00[EUR][1000 genomes]
rs57942381	1.00[EUR][1000 genomes]
rs7126804	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73585679	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753555	chr11:121630790-121646790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121628800-121636200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:121633600-121638000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:121633800-121638400	Weak transcription	Right Atrium	heart
4	chr11:121634000-121637600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:121634000-121637800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:121634400-121636800	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:121634400-121637000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:121634400-121637000	Weak transcription	Fetal Brain Female	brain
9	chr11:121634400-121641600	Weak transcription	Fetal Heart	heart
10	chr11:121634400-121643600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr11:121634600-121636000	Weak transcription	Brain Germinal Matrix	brain
12	chr11:121634600-121636600	Weak transcription	Brain Anterior Caudate	brain
13	chr11:121634800-121636600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:121634800-121636600	Weak transcription	Brain Substantia Nigra	brain
15	chr11:121634800-121637000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:121634800-121637400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr11:121635000-121636600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr11:121635000-121637000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr11:121635000-121637400	Weak transcription	GM12878-XiMat	blood
20	chr11:121635200-121637200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:121635200-121638800	Enhancers	Fetal Stomach	stomach
22	chr11:121635400-121637000	Weak transcription	Primary B cells from cord blood	blood
23	chr11:121635600-121637400	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links