Variant report

Variant	rs12293525
Chromosome Location	chr11:121642986-121642987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11218402	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11824861	1.00[EUR][1000 genomes]
rs12270116	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12282887	0.96[AFR][1000 genomes]
rs17125818	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2851114	1.00[EUR][1000 genomes]
rs57942381	1.00[EUR][1000 genomes]
rs7126804	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73585679	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753555	chr11:121630790-121646790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121634400-121643600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:121637600-121643000	Weak transcription	Fetal Brain Female	brain
3	chr11:121637600-121648000	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:121638800-121643600	Weak transcription	Brain Germinal Matrix	brain
5	chr11:121641600-121643200	Enhancers	Fetal Stomach	stomach
6	chr11:121642800-121644400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:121642800-121647000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:121642800-121647400	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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