Variant report

Variant	rs57942381
Chromosome Location	chr11:121541190-121541191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121540015..121542237-chr11:121544199..121546981,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11218299	1.00[EUR][1000 genomes]
rs11218402	1.00[EUR][1000 genomes]
rs11824861	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270116	1.00[EUR][1000 genomes]
rs12293525	1.00[EUR][1000 genomes]
rs17125818	1.00[EUR][1000 genomes]
rs2851114	1.00[EUR][1000 genomes]
rs515954	1.00[ASN][1000 genomes]
rs7126804	1.00[EUR][1000 genomes]
rs73585679	1.00[EUR][1000 genomes]
rs7951439	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121525800-121543400	Weak transcription	Gastric	stomach
2	chr11:121533000-121545400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:121533800-121541600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:121538600-121544800	Enhancers	Fetal Brain Male	brain
5	chr11:121538800-121541200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:121538800-121541400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:121539200-121541800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:121539800-121541800	Enhancers	Brain Germinal Matrix	brain
9	chr11:121539800-121542200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr11:121540000-121541600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:121540000-121541800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:121540000-121544000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:121540000-121544000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:121540000-121544200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:121540200-121541200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr11:121540200-121541400	Enhancers	Brain Hippocampus Middle	brain
17	chr11:121540200-121541400	Enhancers	Brain Substantia Nigra	brain
18	chr11:121540200-121541800	Enhancers	Brain Cingulate Gyrus	brain
19	chr11:121540200-121541800	Weak transcription	Right Atrium	heart
20	chr11:121540200-121544800	Enhancers	Fetal Intestine Small	intestine
21	chr11:121540400-121541200	Weak transcription	NH-A	brain
22	chr11:121540400-121541600	Enhancers	Brain Anterior Caudate	brain
23	chr11:121540400-121541600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:121540400-121542000	Enhancers	Brain Angular Gyrus	brain
25	chr11:121540400-121543000	Enhancers	Fetal Kidney	kidney
26	chr11:121540400-121544600	Enhancers	Fetal Intestine Large	intestine
27	chr11:121540400-121544600	Enhancers	Fetal Muscle Leg	muscle
28	chr11:121540800-121541400	Enhancers	Fetal Muscle Trunk	muscle
29	chr11:121540800-121542000	Enhancers	Rectal Smooth Muscle	rectum
30	chr11:121540800-121544400	Enhancers	Fetal Stomach	stomach
31	chr11:121541000-121541200	Active TSS	Fetal Brain Female	brain
32	chr11:121541000-121541200	Enhancers	Fetal Lung	lung
33	chr11:121541000-121541200	Enhancers	Stomach Smooth Muscle	stomach
34	chr11:121541000-121541800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:121541000-121542000	Enhancers	Ovary	ovary
36	chr11:121541000-121545000	Enhancers	Colon Smooth Muscle	Colon

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