Variant report

Variant	rs11218299
Chromosome Location	chr11:121339078-121339079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121328578..121330847-chr11:121337698..121340235,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11824861	1.00[EUR][1000 genomes]
rs57942381	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121331600-121341200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr11:121332000-121339800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:121332800-121339200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:121333000-121340600	Enhancers	Fetal Thymus	thymus
5	chr11:121333200-121343400	Enhancers	Liver	Liver
6	chr11:121333400-121340800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr11:121333600-121340000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:121333800-121339800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr11:121333800-121340000	Enhancers	Brain Substantia Nigra	brain
10	chr11:121334000-121340000	Enhancers	Brain Cingulate Gyrus	brain
11	chr11:121334200-121339800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:121334200-121340000	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr11:121334200-121340800	Enhancers	Primary hematopoietic stem cells	blood
14	chr11:121334400-121339200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:121334600-121339200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:121334600-121340000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:121335200-121339200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr11:121335200-121339800	Enhancers	Thymus	Thymus
19	chr11:121335400-121339200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr11:121335400-121339200	Enhancers	Fetal Stomach	stomach
21	chr11:121335400-121340200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr11:121335600-121340600	Enhancers	Primary T cells fromperipheralblood	blood
23	chr11:121336400-121339800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:121336400-121340000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:121336600-121340000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr11:121336600-121340000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr11:121336800-121339200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:121336800-121339200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:121336800-121339200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr11:121336800-121339800	Enhancers	H9 Cell Line	embryonic stem cell
31	chr11:121337400-121339200	Enhancers	Stomach Mucosa	stomach
32	chr11:121337400-121339800	Enhancers	Brain Hippocampus Middle	brain
33	chr11:121337400-121340000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr11:121337400-121340200	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr11:121337400-121343000	Weak transcription	Small Intestine	intestine
36	chr11:121337400-121347000	Weak transcription	Gastric	stomach
37	chr11:121337400-121349400	Weak transcription	Ovary	ovary
38	chr11:121337400-121350600	Weak transcription	Left Ventricle	heart
39	chr11:121337400-121358800	Weak transcription	Right Ventricle	heart
40	chr11:121337600-121339200	Enhancers	Rectal Smooth Muscle	rectum
41	chr11:121337600-121339400	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr11:121337600-121339800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr11:121337600-121340000	Enhancers	Brain Anterior Caudate	brain
44	chr11:121337600-121340600	Weak transcription	Dnd41	blood
45	chr11:121337600-121342000	Weak transcription	Fetal Brain Male	brain
46	chr11:121337600-121358800	Weak transcription	Brain Germinal Matrix	brain
47	chr11:121338000-121339200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr11:121338000-121339200	Flanking Active TSS	Primary T cells from cord blood	blood
49	chr11:121338000-121339200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr11:121338000-121339200	Flanking Active TSS	NHEK	skin

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