Variant report

Variant	rs515954
Chromosome Location	chr11:121559262-121559263
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10502262	1.00[CHB][hapmap]
rs11600268	1.00[EUR][1000 genomes]
rs11824861	1.00[ASN][1000 genomes]
rs11828225	1.00[MEX][hapmap]
rs1699105	1.00[CHB][hapmap]
rs17125548	1.00[MEX][hapmap]
rs57942381	1.00[ASN][1000 genomes]
rs7130349	1.00[EUR][1000 genomes]
rs7943022	1.00[EUR][1000 genomes]
rs7951439	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121558000-121559400	Enhancers	Fetal Kidney	kidney
2	chr11:121558200-121560400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr11:121558400-121559400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr11:121558400-121559400	Enhancers	Fetal Heart	heart
5	chr11:121558400-121559400	Enhancers	Fetal Stomach	stomach
6	chr11:121558400-121559600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr11:121558400-121560000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:121558400-121560200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:121558400-121560400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr11:121558400-121560600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:121558400-121560800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:121558400-121560800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr11:121558600-121559400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:121558600-121559400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:121558600-121559400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:121558600-121559400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:121558600-121559400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr11:121558600-121559400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr11:121558600-121559400	Genic enhancers	HSMM	muscle
20	chr11:121558600-121559600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr11:121558600-121559600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:121558600-121559600	Enhancers	NH-A	brain
23	chr11:121558600-121560200	Enhancers	H9 Cell Line	embryonic stem cell
24	chr11:121558600-121560200	Enhancers	Fetal Muscle Leg	muscle
25	chr11:121558600-121560200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr11:121558600-121560400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:121558600-121560400	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr11:121558600-121560400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr11:121558600-121560400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:121558600-121560400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:121558600-121560600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr11:121558600-121561000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr11:121558800-121559400	Enhancers	Psoas Muscle	Psoas
34	chr11:121558800-121559800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:121558800-121560400	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr11:121559000-121559400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:121559000-121560000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr11:121559000-121560200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:121559000-121560400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:121559000-121561000	Enhancers	HepG2	liver
41	chr11:121559000-121566600	Weak transcription	Pancreas	Pancrea
42	chr11:121559200-121559400	Flanking Active TSS	HSMMtube	muscle
43	chr11:121559200-121560000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:121559200-121560000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:121559200-121560200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:121559200-121560200	Enhancers	Osteobl	bone
47	chr11:121559200-121560400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:121559200-121567000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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