Variant report

Variant	rs1503541
Chromosome Location	chr4:120861686-120861687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11934892	0.84[ASN][1000 genomes]
rs17007352	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17007377	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17007882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17009563	1.00[AMR][1000 genomes]
rs17010483	1.00[AMR][1000 genomes]
rs17010801	1.00[AMR][1000 genomes]
rs7660474	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7660507	1.00[EUR][1000 genomes]
rs9637604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv879849	chr4:120823634-120922444	Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120860600-120861800	Active TSS	Fetal Heart	heart
2	chr4:120860600-120862000	Active TSS	Right Ventricle	heart
3	chr4:120860600-120863000	Active TSS	Right Atrium	heart
4	chr4:120861000-120862600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:120861200-120861800	Weak transcription	Left Ventricle	heart
6	chr4:120861600-120861800	Enhancers	Brain Anterior Caudate	brain
7	chr4:120861600-120862000	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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