Variant report

Variant	rs17007352
Chromosome Location	chr4:120817274-120817275
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1503541	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005555	1.00[AMR][1000 genomes]
rs17007377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17007882	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17009563	1.00[AMR][1000 genomes]
rs9637604	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120815800-120818400	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:120816600-120818200	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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