Variant report

Variant	rs1503625
Chromosome Location	chr4:127705493-127705494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127655557..127658334-chr4:127703330..127706969,3	K562	blood:
2	chr4:127699715..127702896-chr4:127704901..127707141,5	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10518504	0.88[ASN][1000 genomes]
rs12502596	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12502973	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12504544	0.84[AMR][1000 genomes]
rs12507245	0.82[EUR][1000 genomes]
rs12513219	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12649784	0.87[CEU][hapmap]
rs13105329	0.83[ASN][1000 genomes]
rs1503603	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1503617	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17011535	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17011594	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17011614	0.82[EUR][1000 genomes]
rs1847345	0.97[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2089062	0.82[AMR][1000 genomes]
rs2134644	0.84[AMR][1000 genomes]
rs34402168	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs35077555	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4834141	0.82[ASN][1000 genomes]
rs55723347	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs55961686	0.84[AMR][1000 genomes]
rs55984383	0.84[AMR][1000 genomes]
rs56103004	0.82[AMR][1000 genomes]
rs56167450	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs57297582	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60076307	0.82[EUR][1000 genomes]
rs60860289	0.82[EUR][1000 genomes]
rs62322164	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs62322165	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs62322169	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs62322174	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs62322183	0.82[EUR][1000 genomes]
rs62322187	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62322188	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62322189	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62322226	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62322227	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62322228	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62324179	0.86[ASN][1000 genomes]
rs62324220	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs62324222	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs62324225	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6846559	0.82[ASN][1000 genomes]
rs72674475	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs72674499	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7694191	0.82[ASN][1000 genomes]
rs7695444	0.97[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7696279	0.82[EUR][1000 genomes]
rs951784	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1007477	chr4:127561735-127726291	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537244	chr4:127561735-127726291	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879907	chr4:127646765-127709859	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv879908	chr4:127646765-127749390	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv818269	chr4:127700428-127727154	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127698600-127715200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:127700000-127706000	Weak transcription	HMEC	breast
3	chr4:127701000-127706000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:127701600-127706000	Weak transcription	NHDF-Ad	bronchial
5	chr4:127702000-127706200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:127704000-127706200	Weak transcription	K562	blood

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