Variant report

Variant	rs1504342
Chromosome Location	chr8:113985960-113985961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10092455	0.91[YRI][hapmap]
rs10092868	0.89[CHD][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap]
rs10094069	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap]
rs10094486	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1021875	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap]
rs1021876	0.89[CHD][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap]
rs1021877	0.89[CHD][hapmap];0.88[GIH][hapmap];0.87[TSI][hapmap]
rs1021878	0.89[CHD][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap]
rs1034511	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.93[TSI][hapmap]
rs1038191	0.81[ASW][hapmap];0.81[YRI][hapmap]
rs1038192	0.89[TSI][hapmap]
rs10505196	0.80[TSI][hapmap]
rs10505199	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap]
rs10955642	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1156075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap]
rs1156076	1.00[CEU][hapmap]
rs1159225	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap]
rs11985196	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11995656	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];0.93[TSI][hapmap]
rs12675949	0.89[CHD][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap]
rs1351387	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs1354446	0.89[CHD][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap]
rs1383294	0.89[CHD][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap]
rs1383298	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1383299	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs1394270	0.89[CHD][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap]
rs1472724	0.89[CHD][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap]
rs1480443	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1504337	0.84[ASN][1000 genomes]
rs1504338	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1504339	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1504340	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1504343	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1504346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap]
rs1504349	0.81[YRI][hapmap]
rs1522064	0.89[CHD][hapmap];0.87[GIH][hapmap];0.89[TSI][hapmap]
rs1532797	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs1532798	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap]
rs1532799	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap]
rs1600574	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.98[TSI][hapmap]
rs17602288	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17602393	0.89[CHD][hapmap];0.86[TSI][hapmap]
rs17602529	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17659540	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap]
rs1857717	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap]
rs1857718	0.89[CHD][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap]
rs1948845	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap]
rs1969112	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap]
rs2030506	0.89[CHD][hapmap];0.84[GIH][hapmap];0.82[TSI][hapmap]
rs2045539	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap]
rs2125550	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2883836	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4242551	0.89[CHD][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap]
rs4876299	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4876300	0.89[CHD][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap]
rs4876502	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[MKK][hapmap]
rs4876507	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap]
rs4876509	0.87[YRI][hapmap]
rs58021089	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6982602	0.89[CHD][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap]
rs6993468	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997105	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap]
rs6999773	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7004426	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7007093	0.89[CHD][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap]
rs7007990	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7812971	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs7817385	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7817505	0.89[CHD][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7820383	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7824314	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7824563	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7836578	0.85[GIH][hapmap];0.89[TSI][hapmap]
rs7840573	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs899831	0.89[CHD][hapmap];0.85[GIH][hapmap];0.87[TSI][hapmap]
rs9283946	0.89[CHD][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap]
rs9297481	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9297482	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap]
rs9297486	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs964763	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap]
rs964764	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap]
rs972149	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap]
rs974760	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs989774	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs990221	0.81[YRI][hapmap]
rs990745	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	esv2754315	chr8:113736824-114048824	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv891326	chr8:113777669-114091732	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv891327	chr8:113828980-114109342	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2756439	chr8:113920441-114060648	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2753160	chr8:113920441-114190390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv891328	chr8:113929201-113994873	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv891329	chr8:113929201-114021484	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv534557	chr8:113929740-114131155	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2756532	chr8:113931884-114120265	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1030305	chr8:113942232-113992360	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv891330	chr8:113942738-114009227	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv891331	chr8:113951265-114108147	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1017791	chr8:113953316-114017477	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1020528	chr8:113955730-113999858	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv1015797	chr8:113958358-113999858	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv465766	chr8:113959206-114025705	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv611908	chr8:113959206-114025705	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv2752734	chr8:113972011-114113977	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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