Variant report

Variant	rs1532797
Chromosome Location	chr8:113992579-113992580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10094069	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs1021875	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs1034511	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10505199	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs1073350	0.93[YRI][hapmap]
rs10808453	0.91[YRI][hapmap]
rs1156075	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs1156076	0.92[CEU][hapmap]
rs1159225	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs11995656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1351387	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs1351393	0.92[YRI][hapmap]
rs1383299	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1480443	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1504336	0.93[YRI][hapmap]
rs1504338	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs1504339	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs1504342	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs1504343	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs1504345	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1504346	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs1532798	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs1532799	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs1600574	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs17602288	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs17602529	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs17659540	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs1857717	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs1948845	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs1969112	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs2045539	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs2125550	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs2883836	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs4876299	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs4876502	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs4876507	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs6993468	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6997105	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs7004426	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7007990	0.83[ASN][1000 genomes]
rs7812971	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7840573	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs9297481	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs9297482	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs9297486	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs9297487	0.92[YRI][hapmap]
rs964763	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs964764	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs972149	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs974760	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs989774	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs990745	0.93[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	esv2754315	chr8:113736824-114048824	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv891326	chr8:113777669-114091732	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv891327	chr8:113828980-114109342	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2756439	chr8:113920441-114060648	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2753160	chr8:113920441-114190390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv891328	chr8:113929201-113994873	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv891329	chr8:113929201-114021484	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv534557	chr8:113929740-114131155	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2756532	chr8:113931884-114120265	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv891330	chr8:113942738-114009227	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv891331	chr8:113951265-114108147	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1017791	chr8:113953316-114017477	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1020528	chr8:113955730-113999858	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv1015797	chr8:113958358-113999858	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv465766	chr8:113959206-114025705	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv611908	chr8:113959206-114025705	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv2752734	chr8:113972011-114113977	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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