Variant report

Variant	rs1504336
Chromosome Location	chr8:114057108-114057109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:114054367..114057149-chr8:114057315..114060001,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10092455	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs1026490	0.85[JPT][hapmap]
rs1038191	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs1073350	0.85[CHB][hapmap];1.00[YRI][hapmap]
rs10808453	0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs10955643	0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs11985714	0.85[JPT][hapmap]
rs11995656	0.92[YRI][hapmap]
rs12547758	0.85[JPT][hapmap]
rs1351393	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1383302	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs1402940	0.85[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1459008	0.83[JPT][hapmap]
rs1504349	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs1532797	0.93[YRI][hapmap]
rs1857719	0.84[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1993606	0.85[JPT][hapmap]
rs2068985	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs4876500	0.85[JPT][hapmap]
rs4876509	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs6469450	0.84[CHB][hapmap]
rs6999348	0.84[CHB][hapmap];0.90[ASN][1000 genomes]
rs7464518	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs7817318	0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs9297487	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs978320	0.83[JPT][hapmap]
rs988862	0.85[CHB][hapmap]
rs989774	0.93[YRI][hapmap]
rs990221	0.85[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:55 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv891326	chr8:113777669-114091732	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv891327	chr8:113828980-114109342	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2756439	chr8:113920441-114060648	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2753160	chr8:113920441-114190390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv534557	chr8:113929740-114131155	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2756532	chr8:113931884-114120265	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv891331	chr8:113951265-114108147	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2752734	chr8:113972011-114113977	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv511390	chr8:114045437-114076722	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3479854	chr8:114055176-114060374	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv512061	chr8:114055963-114059132	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3479858	chr8:114056082-114059153	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3479855	chr8:114056361-114058889	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3479857	chr8:114056414-114058860	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3479852	chr8:114056431-114058808	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3479856	chr8:114056478-114058778	Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv1004496	chr8:114056492-114058771	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3479859	chr8:114056493-114058776	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv987688	chr8:114056495-114059122	Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv991665	chr8:114056548-114058733	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv1003423	chr8:114056559-114058727	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv21237	chr8:114056559-114058727	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv611917	chr8:114056593-114057888	Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv611918	chr8:114056593-114057939	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv611919	chr8:114056593-114058217	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv611920	chr8:114056593-114058362	Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv611921	chr8:114056593-114058465	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv611922	chr8:114056593-114058624	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv611923	chr8:114056593-114062247	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv611924	chr8:114056593-114066751	Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv611925	chr8:114056695-114057888	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv611926	chr8:114056695-114057939	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
35	nsv611927	chr8:114056695-114058004	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv611928	chr8:114056695-114058217	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv611929	chr8:114056695-114058362	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv611930	chr8:114056695-114058465	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
39	nsv611931	chr8:114056695-114058624	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv611932	chr8:114056695-114062247	Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
41	nsv611933	chr8:114056695-114066751	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
42	nsv611934	chr8:114056747-114057939	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
43	nsv611935	chr8:114056747-114058217	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
44	nsv611936	chr8:114056747-114058362	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
45	nsv611937	chr8:114056747-114058465	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
46	nsv611938	chr8:114056747-114058624	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
47	nsv611939	chr8:114056747-114062247	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
48	nsv611940	chr8:114056747-114066751	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
49	nsv611941	chr8:114056930-114058217	Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
50	nsv611942	chr8:114056930-114058624	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:114057000-114057600	Weak transcription	Fetal Brain Male	brain

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