Variant report

Variant	rs988862
Chromosome Location	chr8:114196676-114196677
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10092455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1038191	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1073350	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10808453	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10955643	0.92[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1351393	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs1383302	1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap]
rs1402940	1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1480442	0.81[EUR][1000 genomes]
rs1480444	0.81[EUR][1000 genomes]
rs1504336	0.85[CHB][hapmap]
rs1504349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1857719	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1915862	0.81[EUR][1000 genomes]
rs2068985	0.91[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs4876509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6469450	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs6999348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7464518	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs7817318	0.92[CHB][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap];0.84[ASN][1000 genomes]
rs9297487	0.95[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap]
rs978320	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs990221	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831428	chr8:114102983-114320802	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv916637	chr8:114116303-114338450	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1035014	chr8:114180224-114261619	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1022803	chr8:114180224-114354093	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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