Variant report

Variant	rs2068985
Chromosome Location	chr8:114053798-114053799
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10092455	0.91[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap]
rs10094069	0.88[YRI][hapmap]
rs1021875	0.89[YRI][hapmap]
rs1038191	0.90[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs1073350	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs10808453	0.90[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs10955643	0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1156075	0.89[YRI][hapmap]
rs1159225	0.89[YRI][hapmap]
rs1351393	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1383302	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs1402940	0.84[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1504336	1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs1504339	0.94[YRI][hapmap]
rs1504349	0.91[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap]
rs1857719	0.90[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1948845	0.88[YRI][hapmap]
rs2045539	0.89[YRI][hapmap]
rs4876502	0.82[YRI][hapmap]
rs4876509	0.91[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]
rs6469450	0.85[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap]
rs6993468	0.88[YRI][hapmap];0.91[AFR][1000 genomes]
rs6997105	0.94[YRI][hapmap]
rs6999348	0.90[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7004426	0.84[AFR][1000 genomes]
rs7464518	0.85[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs7817318	0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9297486	0.91[YRI][hapmap]
rs9297487	0.85[CEU][hapmap];0.91[JPT][hapmap]
rs972149	0.89[YRI][hapmap]
rs978320	0.91[JPT][hapmap]
rs988862	0.91[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs990221	0.91[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv891326	chr8:113777669-114091732	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv891327	chr8:113828980-114109342	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2756439	chr8:113920441-114060648	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2753160	chr8:113920441-114190390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv534557	chr8:113929740-114131155	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2756532	chr8:113931884-114120265	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv891331	chr8:113951265-114108147	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2752734	chr8:113972011-114113977	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv511403	chr8:114029421-114056593	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv511390	chr8:114045437-114076722	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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