Variant report

Variant	rs1480444
Chromosome Location	chr8:114130156-114130157
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10955650	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap]
rs12164180	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12542594	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs12543781	0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap]
rs12547021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12547550	0.89[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap]
rs1383301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs1402940	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1402944	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs1480441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1480442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1522059	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1522060	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs16892637	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs17840621	0.88[ASN][1000 genomes]
rs1857719	0.84[AMR][1000 genomes]
rs1904808	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1915862	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2127690	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2219898	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap]
rs2356049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4333631	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap]
rs62519810	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6988145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs6993675	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap]
rs6999348	0.82[AMR][1000 genomes]
rs7812921	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7818176	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap]
rs9642819	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs990221	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	esv2753160	chr8:113920441-114190390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv534557	chr8:113929740-114131155	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv831428	chr8:114102983-114320802	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv916637	chr8:114116303-114338450	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:114129400-114132800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:114129800-114130200	ZNF genes & repeats	Brain Substantia Nigra	brain
3	chr8:114129800-114132800	Weak transcription	Brain Germinal Matrix	brain

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