Variant report

Variant	rs2219898
Chromosome Location	chr8:114186003-114186004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10096816	0.81[JPT][hapmap]
rs10103599	0.81[JPT][hapmap]
rs10107860	0.81[JPT][hapmap]
rs10108074	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs1038191	0.82[TSI][hapmap]
rs10447963	0.81[JPT][hapmap]
rs10447988	0.85[JPT][hapmap]
rs10955650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10955654	0.81[JPT][hapmap]
rs10955655	0.81[JPT][hapmap]
rs12542594	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12543781	0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap]
rs12545118	0.81[JPT][hapmap]
rs12547021	0.94[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs12547550	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12548951	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs1351393	0.82[TSI][hapmap]
rs1382469	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.82[ASN][1000 genomes]
rs1383301	0.94[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs1402940	0.81[EUR][1000 genomes]
rs1402942	0.81[JPT][hapmap]
rs1402944	0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap]
rs1480441	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.88[JPT][hapmap];0.85[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs1480442	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1480444	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1480452	0.81[GIH][hapmap]
rs1480459	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs1522059	0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap]
rs1522060	0.85[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap]
rs1522061	0.81[JPT][hapmap]
rs1551959	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1585720	0.81[JPT][hapmap]
rs16892637	0.95[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.84[ASN][1000 genomes]
rs17840621	0.97[ASN][1000 genomes]
rs1857719	0.82[TSI][hapmap]
rs1904808	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1915862	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2127690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2177112	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs2356049	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap]
rs4242552	0.81[JPT][hapmap]
rs4320578	0.81[JPT][hapmap]
rs4333631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4370561	0.81[JPT][hapmap]
rs4403438	0.81[JPT][hapmap]
rs4433179	0.81[JPT][hapmap]
rs4437686	0.81[CHD][hapmap];0.81[JPT][hapmap]
rs62519810	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6984847	0.81[JPT][hapmap]
rs6988145	0.94[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs6993675	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs6996176	0.81[JPT][hapmap]
rs6999348	0.82[TSI][hapmap]
rs7001577	0.81[CHD][hapmap]
rs7002376	0.81[JPT][hapmap]
rs7002915	0.83[CHD][hapmap]
rs7012271	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs720405	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs720406	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs7464518	0.81[TSI][hapmap]
rs7812921	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7818176	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7826077	0.81[JPT][hapmap]
rs7833144	0.81[JPT][hapmap]
rs9297487	0.82[TSI][hapmap]
rs9642819	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9642820	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9643077	0.81[JPT][hapmap]
rs984990	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	esv2753160	chr8:113920441-114190390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv831428	chr8:114102983-114320802	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv916637	chr8:114116303-114338450	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1035014	chr8:114180224-114261619	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1022803	chr8:114180224-114354093	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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