Variant report

Variant	rs6988145
Chromosome Location	chr8:114089314-114089315
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:114086615..114089579-chr8:114091376..114092962,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10505196	0.84[YRI][hapmap]
rs10955650	0.95[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs12164180	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12542594	0.90[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap]
rs12543781	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs12545742	0.92[YRI][hapmap]
rs12547021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12547550	0.89[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap]
rs1383301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1480441	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1480442	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1480444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1504344	0.92[YRI][hapmap]
rs1504345	0.84[YRI][hapmap]
rs1522059	0.85[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap]
rs1522060	0.85[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap]
rs17840621	0.81[ASN][1000 genomes]
rs1857719	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1904808	0.84[EUR][1000 genomes]
rs1915862	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2127690	0.94[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2219898	0.94[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs2356049	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4333631	0.95[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs62519810	0.81[ASN][1000 genomes]
rs6993675	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6999348	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7012982	0.91[YRI][hapmap]
rs7812921	0.90[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap]
rs7818176	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs9642819	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs990221	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv891326	chr8:113777669-114091732	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv891327	chr8:113828980-114109342	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753160	chr8:113920441-114190390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv534557	chr8:113929740-114131155	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2756532	chr8:113931884-114120265	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv891331	chr8:113951265-114108147	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2752734	chr8:113972011-114113977	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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