Variant report

Variant	rs1522060
Chromosome Location	chr8:114230296-114230297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:114229145..114230999-chr8:114232153..114234565,2	K562	blood:
2	chr8:114228732..114230731-chr8:114233226..114235418,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10096816	0.81[YRI][hapmap]
rs10955650	0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs12542594	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs12543781	0.80[CHB][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap]
rs12545118	0.81[YRI][hapmap]
rs12545742	0.83[ASW][hapmap];0.84[LWK][hapmap];0.87[YRI][hapmap]
rs12547021	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs12547550	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs12549502	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12550801	1.00[CEU][hapmap]
rs1382469	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1383301	0.85[CHB][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap]
rs1402944	0.93[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.92[YRI][hapmap]
rs1480441	0.85[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap]
rs1480442	0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1480444	0.85[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1480452	1.00[CEU][hapmap];0.81[GIH][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs1480459	0.81[YRI][hapmap]
rs1522059	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap]
rs1522061	0.81[YRI][hapmap]
rs1551959	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1600572	1.00[CEU][hapmap]
rs16892637	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17609383	1.00[CEU][hapmap]
rs17840621	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1915862	0.84[ASN][1000 genomes]
rs2127690	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs2219898	0.85[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap]
rs2356049	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs4242552	0.81[YRI][hapmap]
rs4333631	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs4433179	0.81[YRI][hapmap]
rs4437686	0.81[YRI][hapmap]
rs62519810	0.98[ASN][1000 genomes]
rs6988145	0.85[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap]
rs6993675	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs6996176	0.81[YRI][hapmap]
rs7002376	0.81[YRI][hapmap]
rs7012271	0.81[YRI][hapmap]
rs720406	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap]
rs7812921	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs7818176	0.85[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap]
rs7826077	0.81[YRI][hapmap]
rs9642819	0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap]
rs9642820	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs9643077	0.81[YRI][hapmap]
rs984990	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831428	chr8:114102983-114320802	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv916637	chr8:114116303-114338450	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1035014	chr8:114180224-114261619	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1022803	chr8:114180224-114354093	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1019367	chr8:114205501-114288454	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1034285	chr8:114227114-114278041	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3336659	chr8:114228376-114232374	Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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