Variant report

Variant	rs12549502
Chromosome Location	chr8:114322355-114322356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12542594	1.00[CEU][hapmap]
rs12547550	1.00[CEU][hapmap]
rs12550801	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap]
rs1382469	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1402944	1.00[CEU][hapmap]
rs1480452	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1522059	1.00[CEU][hapmap]
rs1522060	1.00[CEU][hapmap]
rs1551959	1.00[CEU][hapmap]
rs1600572	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[JPT][hapmap]
rs16892637	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17609383	1.00[CEU][hapmap]
rs17840621	0.88[EUR][1000 genomes]
rs720406	1.00[CEU][hapmap]
rs7812921	1.00[CEU][hapmap]
rs9642820	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv916637	chr8:114116303-114338450	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1022803	chr8:114180224-114354093	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links