Variant report

Variant	rs1480452
Chromosome Location	chr8:114168173-114168174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12164180	1.00[CEU][hapmap]
rs12542594	1.00[CEU][hapmap]
rs12547550	1.00[CEU][hapmap]
rs12549502	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs12550801	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1382469	1.00[CEU][hapmap];0.81[GIH][hapmap];0.96[TSI][hapmap]
rs1402944	1.00[CEU][hapmap];0.96[TSI][hapmap]
rs1480442	0.81[GIH][hapmap]
rs1522059	1.00[CEU][hapmap];0.81[GIH][hapmap];0.96[TSI][hapmap]
rs1522060	1.00[CEU][hapmap];0.81[GIH][hapmap];0.92[TSI][hapmap]
rs1600572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16892637	1.00[CEU][hapmap];0.92[TSI][hapmap]
rs17840621	0.81[EUR][1000 genomes]
rs2219898	0.81[GIH][hapmap]
rs7812921	1.00[CEU][hapmap]
rs9642819	0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	esv2753160	chr8:113920441-114190390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv831428	chr8:114102983-114320802	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv916637	chr8:114116303-114338450	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:114168000-114168200	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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