Variant report

Variant	rs12547550
Chromosome Location	chr8:114265455-114265456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10447988	0.82[JPT][hapmap]
rs10955650	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12542594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12543781	0.84[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap]
rs12547021	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs12549502	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12550801	1.00[CEU][hapmap]
rs1382469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1383301	0.89[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap]
rs1402944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1480441	0.88[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap]
rs1480442	0.88[CHB][hapmap];0.85[JPT][hapmap];0.90[YRI][hapmap];0.85[ASN][1000 genomes]
rs1480444	0.89[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap];0.85[ASN][1000 genomes]
rs1480452	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs1522059	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs1522060	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs1551959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1600572	1.00[CEU][hapmap]
rs16892637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17609383	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs17840621	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1915862	0.82[ASN][1000 genomes]
rs2127690	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2219898	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2356049	0.89[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap]
rs4333631	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs62519810	0.96[ASN][1000 genomes]
rs6988145	0.89[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap]
rs6993675	0.89[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap]
rs720406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7812921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7818176	0.89[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs9642819	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs9642820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831428	chr8:114102983-114320802	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv916637	chr8:114116303-114338450	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1022803	chr8:114180224-114354093	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1019367	chr8:114205501-114288454	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1034285	chr8:114227114-114278041	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1027156	chr8:114246358-114290079	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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