Variant report

Variant	rs9642819
Chromosome Location	chr8:114162023-114162024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1038191	0.82[TSI][hapmap]
rs10955650	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs12164180	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs12542594	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs12543781	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12547021	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap]
rs12547550	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs1351393	0.82[TSI][hapmap]
rs1383301	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1402940	0.81[EUR][1000 genomes]
rs1402944	0.90[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap]
rs1480441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs1480442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1480444	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1480452	0.81[GIH][hapmap]
rs1522059	0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap]
rs1522060	0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap]
rs16892637	0.90[CHB][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap]
rs17840621	0.91[ASN][1000 genomes]
rs1857719	0.82[TSI][hapmap]
rs1904808	0.88[EUR][1000 genomes]
rs1915862	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2127690	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap]
rs2219898	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2356049	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4333631	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs62519810	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6988145	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6993675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6999348	0.82[TSI][hapmap]
rs7464518	0.81[TSI][hapmap]
rs7812921	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs7818176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9297487	0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	esv2753160	chr8:113920441-114190390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv831428	chr8:114102983-114320802	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv916637	chr8:114116303-114338450	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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