Variant report

Variant	rs984990
Chromosome Location	chr8:114368635-114368636
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10096816	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10103599	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10107860	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10108074	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10447963	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs10447988	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs10955650	0.83[JPT][hapmap]
rs10955654	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs10955655	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10955656	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12542594	0.83[JPT][hapmap]
rs12545118	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12548951	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs1382469	0.82[JPT][hapmap];0.81[YRI][hapmap]
rs1402942	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1402944	0.82[JPT][hapmap]
rs1480459	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs1522059	0.81[YRI][hapmap]
rs1522060	0.81[YRI][hapmap]
rs1522061	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1551959	0.82[JPT][hapmap]
rs1585720	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs16892637	0.82[JPT][hapmap];0.81[YRI][hapmap]
rs2127690	0.82[JPT][hapmap]
rs2177112	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2219898	0.81[JPT][hapmap]
rs3860882	0.87[EUR][1000 genomes]
rs4242552	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4320578	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4333631	0.83[JPT][hapmap]
rs4370561	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs4403438	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs4433179	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4437686	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4607648	0.89[ASN][1000 genomes]
rs6984847	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs6996176	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6996484	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7001577	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap]
rs7002376	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7002915	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.86[YRI][hapmap]
rs7012271	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs720405	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs720406	0.82[JPT][hapmap]
rs7812921	0.83[JPT][hapmap]
rs7826077	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7833144	1.00[JPT][hapmap];0.87[YRI][hapmap]
rs9642820	0.82[JPT][hapmap]
rs9643077	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9643078	1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2754463	chr8:114353649-114501547	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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