Variant report

Variant	rs7833144
Chromosome Location	chr8:114270125-114270126
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10096816	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs10103599	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10107860	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10108074	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10447963	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs10447988	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10955650	0.83[JPT][hapmap]
rs10955654	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10955655	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10955656	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12542594	0.83[JPT][hapmap]
rs12545118	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs12548951	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1382469	0.82[JPT][hapmap]
rs1402942	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs1402944	0.82[JPT][hapmap]
rs1480459	0.84[CHB][hapmap];0.93[JPT][hapmap];0.86[YRI][hapmap]
rs1522061	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1551959	0.82[JPT][hapmap]
rs1585720	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs16892637	0.82[JPT][hapmap]
rs2127690	0.82[JPT][hapmap]
rs2177112	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs2219898	0.81[JPT][hapmap]
rs28522408	0.88[ASN][1000 genomes]
rs28637150	0.88[ASN][1000 genomes]
rs4242552	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs4320578	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4333631	0.83[JPT][hapmap]
rs4370561	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs4403438	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs4433179	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[ASN][1000 genomes]
rs4437686	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs6984847	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs6996176	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs6996484	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7001577	0.86[JPT][hapmap];0.96[YRI][hapmap]
rs7002376	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs7002915	0.95[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs7012271	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[ASN][1000 genomes]
rs720405	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs720406	0.82[JPT][hapmap]
rs7812921	0.83[JPT][hapmap]
rs7826077	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs9642820	0.82[JPT][hapmap]
rs9643077	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs9643078	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs984990	1.00[JPT][hapmap];0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831428	chr8:114102983-114320802	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv916637	chr8:114116303-114338450	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1022803	chr8:114180224-114354093	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1019367	chr8:114205501-114288454	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1034285	chr8:114227114-114278041	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1027156	chr8:114246358-114290079	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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