Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:114391240-114391390	BE2_C	brain:	n/a	n/a
2	RAD21	chr8:114390721-114391296	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:114189402..114189999-chr8:114390956..114391473,2	MCF-7	breast:
2	chr8:114214112..114215316-chr8:114390224..114391492,6	MCF-7	breast:

Variant related genes	Relation type
CSMD3	TF binding region

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10094251	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10104117	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10108074	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10111510	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs10505202	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10955656	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11778054	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs11984724	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs11986420	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs11997737	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs12334397	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs12678760	0.85[CHB][hapmap]
rs12682363	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs13255149	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs1480461	0.90[JPT][hapmap]
rs16884503	0.82[CHB][hapmap]
rs16892635	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs4876512	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs6993801	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7012235	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7823590	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7843856	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs9643078	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9649936	0.86[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2754463	chr8:114353649-114501547	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1019362	chr8:114377031-114419106	Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1031488	chr8:114382671-114419106	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:114391200-114391400	Enhancers	Brain Anterior Caudate	brain
2	chr8:114391200-114392800	Weak transcription	Brain Inferior Temporal Lobe	brain

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