Variant report

Variant	rs9649936
Chromosome Location	chr8:114370498-114370499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10094251	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10104117	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10111510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs10505202	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10505203	0.92[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap]
rs11778054	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs11984724	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11986420	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs11995255	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs11996690	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11997737	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12334397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12674571	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs12675523	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs12678760	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs12682363	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs13255149	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1480445	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs1480461	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16884442	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs16884503	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs16884505	0.83[ASN][1000 genomes]
rs16884531	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs16884568	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs16892635	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1879739	0.90[JPT][hapmap]
rs1879740	0.90[JPT][hapmap]
rs4607648	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs4876512	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6993801	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6995851	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7012235	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs72670752	0.83[ASN][1000 genomes]
rs7460075	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs7823590	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7843856	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2754463	chr8:114353649-114501547	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9649936	CSMD3	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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