Variant report

Variant	rs6995851
Chromosome Location	chr8:114187478-114187479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr8:114187382-114187582	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
CSMD3	TF binding region

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10088226	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs10094251	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10104117	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10111510	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10505202	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10955648	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs11778054	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11984724	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11986420	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11995255	0.89[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs11996690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11997737	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12334397	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12674571	0.89[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs12675523	0.88[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap]
rs12678623	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs12678760	0.89[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs12680523	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs12681814	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12682363	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs13255149	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1480445	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs1480461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1568552	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16884282	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs16884294	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs16884296	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs16884331	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16884442	0.89[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs16884503	0.89[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs16884505	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16884531	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs16892635	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17606762	1.00[CEU][hapmap]
rs17679991	1.00[CEU][hapmap]
rs1879739	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1879740	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap]
rs28470386	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs28721970	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3967800	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4551388	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs55810383	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61239354	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6981954	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs6985122	1.00[CEU][hapmap]
rs6993801	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7012235	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs72670752	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7460075	0.89[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap]
rs7817251	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7823590	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7843856	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9649936	0.85[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	esv2753160	chr8:113920441-114190390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv831428	chr8:114102983-114320802	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv916637	chr8:114116303-114338450	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1035014	chr8:114180224-114261619	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1022803	chr8:114180224-114354093	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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