Variant report
| Variant | rs17679991 |
|---|---|
| Chromosome Location | chr8:114163227-114163228 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:44)
| rs_ID | r2[population] |
|---|---|
| rs10088226 | 1.00[CEU][hapmap] |
| rs10094251 | 0.89[CEU][hapmap] |
| rs10104117 | 0.89[CEU][hapmap] |
| rs10505197 | 1.00[CEU][hapmap] |
| rs10505202 | 0.88[CEU][hapmap] |
| rs10955648 | 1.00[CEU][hapmap] |
| rs11984724 | 0.89[CEU][hapmap] |
| rs11995255 | 0.89[CEU][hapmap] |
| rs11996690 | 1.00[CEU][hapmap] |
| rs11997737 | 0.89[CEU][hapmap] |
| rs12674571 | 0.89[CEU][hapmap] |
| rs12675523 | 0.88[CEU][hapmap] |
| rs12678623 | 1.00[CEU][hapmap] |
| rs12678760 | 0.89[CEU][hapmap] |
| rs12680523 | 1.00[CEU][hapmap] |
| rs12681814 | 0.97[EUR][1000 genomes] |
| rs1480445 | 1.00[CEU][hapmap] |
| rs1480461 | 1.00[CEU][hapmap] |
| rs1568552 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs16884282 | 1.00[CEU][hapmap] |
| rs16884294 | 1.00[CEU][hapmap] |
| rs16884296 | 1.00[CEU][hapmap] |
| rs16884331 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs16884442 | 0.89[CEU][hapmap] |
| rs16884503 | 0.89[CEU][hapmap] |
| rs16884505 | 0.80[EUR][1000 genomes] |
| rs17606762 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1879739 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs1879740 | 1.00[CEU][hapmap] |
| rs28470386 | 1.00[CEU][hapmap] |
| rs28481615 | 1.00[CEU][hapmap] |
| rs28721970 | 0.90[EUR][1000 genomes] |
| rs3967800 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs4551388 | 1.00[CEU][hapmap] |
| rs55810383 | 0.81[EUR][1000 genomes] |
| rs61239354 | 0.87[EUR][1000 genomes] |
| rs6985122 | 1.00[CEU][hapmap];0.82[CHB][hapmap] |
| rs6993801 | 0.89[CEU][hapmap] |
| rs6995851 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs7012235 | 0.89[CEU][hapmap] |
| rs72670752 | 0.80[EUR][1000 genomes] |
| rs7460075 | 0.89[CEU][hapmap] |
| rs7817251 | 0.87[EUR][1000 genomes] |
| rs7823590 | 0.88[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2753595 | chr8:113283214-114190390 | Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv2753160 | chr8:113920441-114190390 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2754581 | chr8:114029421-114419106 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv831428 | chr8:114102983-114320802 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv916637 | chr8:114116303-114338450 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
