Variant report

Variant	rs16884294
Chromosome Location	chr8:114054927-114054928
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:114054367..114057149-chr8:114057315..114060001,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10088226	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs10093481	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10094251	0.89[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10505197	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10505202	0.88[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10955648	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11984724	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs11995255	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs11996690	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs11997737	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs12675523	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12678623	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12680523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12681814	0.80[EUR][1000 genomes]
rs12682363	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs1480445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs1480461	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs1568552	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs16884282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs16884296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16884442	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs17606762	1.00[CEU][hapmap]
rs17679991	1.00[CEU][hapmap]
rs1879739	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs1879740	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs28470386	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs28481615	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs28721970	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3967800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4551388	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs61239354	0.83[ASN][1000 genomes]
rs6981954	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs6985122	1.00[CEU][hapmap]
rs6995851	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7012235	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs7833953	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv891326	chr8:113777669-114091732	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv891327	chr8:113828980-114109342	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2756439	chr8:113920441-114060648	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2753160	chr8:113920441-114190390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv534557	chr8:113929740-114131155	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2756532	chr8:113931884-114120265	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv891331	chr8:113951265-114108147	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2752734	chr8:113972011-114113977	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv511403	chr8:114029421-114056593	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv511390	chr8:114045437-114076722	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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