Variant report

Variant	rs7833953
Chromosome Location	chr8:113960534-113960535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10088226	0.88[CEU][hapmap]
rs10505197	0.88[CEU][hapmap]
rs12678623	0.88[CEU][hapmap]
rs12680523	0.88[CEU][hapmap]
rs16884282	0.88[CEU][hapmap]
rs16884294	0.88[CEU][hapmap]
rs16884296	1.00[CEU][hapmap]
rs16884331	0.88[CEU][hapmap]
rs28470386	0.88[CEU][hapmap]
rs28481615	0.88[CEU][hapmap]
rs3967800	0.88[CEU][hapmap]
rs4551388	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv534270	chr8:113585830-113979075	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
3	esv2754315	chr8:113736824-114048824	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv891326	chr8:113777669-114091732	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv891327	chr8:113828980-114109342	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1019197	chr8:113915139-113966976	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv2756439	chr8:113920441-114060648	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2753160	chr8:113920441-114190390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv891328	chr8:113929201-113994873	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv891329	chr8:113929201-114021484	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv534557	chr8:113929740-114131155	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2756532	chr8:113931884-114120265	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1030305	chr8:113942232-113992360	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv891330	chr8:113942738-114009227	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv891331	chr8:113951265-114108147	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1017791	chr8:113953316-114017477	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1020528	chr8:113955730-113999858	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
18	nsv1015797	chr8:113958358-113999858	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv465766	chr8:113959206-114025705	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv611908	chr8:113959206-114025705	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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