Variant report

Variant	rs11997737
Chromosome Location	chr8:114251641-114251642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10088226	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10094251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10104117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10111510	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10505202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10505203	0.81[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap]
rs10955648	0.89[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs11778054	0.88[ASW][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap]
rs11984724	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11986420	0.88[ASW][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap]
rs11995255	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs11996690	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12334397	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[ASN][1000 genomes]
rs12674571	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs12675523	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs12678760	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs12680523	0.89[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12681814	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12682363	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13255149	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs1480445	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs1480461	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1568552	0.89[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16884294	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs16884296	0.88[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs16884331	0.89[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16884442	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs16884503	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs16884505	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16884531	0.81[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs16884568	0.81[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs16892635	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[MKK][hapmap];0.86[YRI][hapmap];0.88[ASN][1000 genomes]
rs17606762	0.89[CEU][hapmap]
rs17679991	0.89[CEU][hapmap]
rs1879739	0.89[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1879740	0.89[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap]
rs28470386	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap]
rs28721970	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3967800	0.89[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4551388	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap]
rs4607648	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4876512	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55810383	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61239354	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6981954	0.90[JPT][hapmap]
rs6985122	0.89[CEU][hapmap]
rs6993801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6995851	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7012235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs72670752	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7460075	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs7817251	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7823590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7843856	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.88[ASN][1000 genomes]
rs9649936	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831428	chr8:114102983-114320802	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv916637	chr8:114116303-114338450	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1035014	chr8:114180224-114261619	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1022803	chr8:114180224-114354093	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1019367	chr8:114205501-114288454	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1034285	chr8:114227114-114278041	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1027156	chr8:114246358-114290079	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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