Variant report

Variant	rs10505203
Chromosome Location	chr8:114389690-114389691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10094251	0.81[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs10104117	0.81[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs10111510	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs10505202	0.80[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs11778054	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11984724	0.81[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap]
rs11986420	0.86[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap]
rs11995255	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11996690	0.85[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap]
rs11997737	0.81[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap]
rs12334397	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs12674571	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12675523	0.80[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12678760	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs12682363	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs13255149	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs1480445	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1480461	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs16884442	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16884503	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs16884531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs16884568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs16892635	0.86[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap]
rs4876512	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.80[YRI][hapmap]
rs6993801	0.81[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap]
rs7012235	0.81[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap]
rs72670797	0.92[EUR][1000 genomes]
rs7460075	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7823590	0.80[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap]
rs7843856	0.86[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap]
rs9649936	0.92[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2754463	chr8:114353649-114501547	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1019362	chr8:114377031-114419106	Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1031488	chr8:114382671-114419106	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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