Variant report

Variant	rs1505298
Chromosome Location	chr3:24284794-24284795
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13091273	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1562737	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4858597	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826230	0.87[AMR][1000 genomes]
rs826231	0.89[AMR][1000 genomes]
rs826233	0.87[AMR][1000 genomes]
rs826236	0.85[AMR][1000 genomes]
rs862247	0.89[AMR][1000 genomes]
rs9843631	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9843698	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9863517	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24268200-24291000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:24272400-24301400	Weak transcription	Fetal Intestine Large	intestine
3	chr3:24276600-24286200	Weak transcription	Liver	Liver
4	chr3:24277200-24286200	Weak transcription	HepG2	liver
5	chr3:24279600-24291400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr3:24282200-24284800	Enhancers	Psoas Muscle	Psoas
7	chr3:24282400-24285600	Strong transcription	Fetal Intestine Small	intestine
8	chr3:24282600-24285600	Enhancers	Brain Germinal Matrix	brain
9	chr3:24282800-24285200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:24282800-24285200	Enhancers	NHDF-Ad	bronchial
11	chr3:24282800-24285400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr3:24282800-24285400	Enhancers	Adipose Nuclei	Adipose
13	chr3:24283000-24285000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:24283000-24285000	Enhancers	HMEC	breast
15	chr3:24283000-24285200	Enhancers	Fetal Brain Male	brain
16	chr3:24283000-24285400	Enhancers	Colon Smooth Muscle	Colon
17	chr3:24283200-24284800	Enhancers	NHEK	skin
18	chr3:24283200-24285200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:24283200-24285200	Enhancers	Left Ventricle	heart
20	chr3:24283400-24285000	Enhancers	Ovary	ovary
21	chr3:24283400-24285200	Enhancers	Fetal Lung	lung
22	chr3:24283600-24285000	Weak transcription	Right Atrium	heart
23	chr3:24283600-24297000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:24284000-24285200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr3:24284200-24285000	Enhancers	Brain Hippocampus Middle	brain
26	chr3:24284200-24285200	Enhancers	Placenta	Placenta
27	chr3:24284200-24285200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr3:24284200-24300600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:24284400-24284800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:24284400-24285000	Enhancers	Hela-S3	cervix
31	chr3:24284400-24285400	Enhancers	Stomach Smooth Muscle	stomach
32	chr3:24284400-24285600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr3:24284400-24286400	Weak transcription	Aorta	Aorta
34	chr3:24284400-24295200	Weak transcription	Fetal Stomach	stomach
35	chr3:24284600-24286000	Weak transcription	Brain Anterior Caudate	brain
36	chr3:24284600-24286200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr3:24284600-24286200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:24284600-24295200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:24284600-24300400	Weak transcription	Pancreas	Pancrea

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