Variant report

Variant	rs826236
Chromosome Location	chr3:24314612-24314613
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13091273	0.84[AMR][1000 genomes]
rs1505298	0.85[AMR][1000 genomes]
rs1562737	0.87[AMR][1000 genomes]
rs4858597	0.87[AMR][1000 genomes]
rs826230	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs826231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs826233	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs826238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs862247	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9843631	0.87[AMR][1000 genomes]
rs9843698	0.87[AMR][1000 genomes]
rs9863517	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24297200-24335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24306600-24314800	Weak transcription	A549	lung
3	chr3:24310800-24314800	Enhancers	Fetal Intestine Small	intestine
4	chr3:24311000-24335200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:24312200-24314800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:24312200-24319400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:24312200-24333800	Weak transcription	Fetal Intestine Large	intestine
8	chr3:24313800-24315000	Enhancers	Stomach Mucosa	stomach
9	chr3:24314000-24314800	Enhancers	HMEC	breast
10	chr3:24314000-24315200	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr3:24314200-24314800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr3:24314200-24315600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:24314200-24316000	Enhancers	HepG2	liver
14	chr3:24314400-24314800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:24314600-24314800	Enhancers	Aorta	Aorta
16	chr3:24314600-24314800	Enhancers	Rectal Smooth Muscle	rectum
17	chr3:24314600-24315000	Flanking Active TSS	Liver	Liver
18	chr3:24314600-24315000	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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