Variant report

Variant	rs826238
Chromosome Location	chr3:24316463-24316464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24316354..24319251-chr3:24562241..24563893,2	MCF-7	breast:
2	chr3:24310446..24312352-chr3:24315902..24317669,2	MCF-7	breast:
3	chr3:24315762..24319289-chr3:24327821..24330546,3	K562	blood:
4	chr3:24310466..24314073-chr3:24315479..24317996,3	K562	blood:
5	chr3:24315110..24317953-chr3:24633288..24636026,3	MCF-7	breast:
6	chr3:24275513..24278342-chr3:24315573..24318110,2	K562	blood:
7	chr3:24313990..24316665-chr3:24533648..24537747,6	MCF-7	breast:
8	chr3:24315941..24319233-chr3:24534276..24537177,3	MCF-7	breast:
9	chr3:24305621..24308372-chr3:24314750..24317719,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs826230	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs826231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs826233	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs826236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs862247	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24297200-24335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24311000-24335200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:24312200-24319400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:24312200-24333800	Weak transcription	Fetal Intestine Large	intestine
5	chr3:24314800-24327200	Weak transcription	Fetal Intestine Small	intestine
6	chr3:24314800-24328400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:24315400-24318000	Weak transcription	Aorta	Aorta
8	chr3:24316000-24317200	Weak transcription	HepG2	liver
9	chr3:24316200-24316600	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links