Variant report

Variant	rs1505349
Chromosome Location	chr2:213291506-213291507
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10153722	0.81[CEU][hapmap]
rs10190653	0.81[CEU][hapmap]
rs10193290	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10196652	0.81[CEU][hapmap];0.86[GIH][hapmap]
rs10497973	0.81[CEU][hapmap]
rs11689233	0.81[CEU][hapmap];0.86[GIH][hapmap]
rs13385225	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13387495	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13388843	1.00[AFR][1000 genomes]
rs13394464	0.81[CEU][hapmap]
rs13408977	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13424127	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13429255	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1482381	0.81[CEU][hapmap]
rs1505348	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1552161	0.81[CEU][hapmap]
rs1586045	0.80[CEU][hapmap]
rs16848520	0.88[CEU][hapmap];0.83[MEX][hapmap];0.85[EUR][1000 genomes]
rs17260933	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap]
rs17325381	0.80[CEU][hapmap]
rs1882352	0.81[CEU][hapmap]
rs1921630	0.81[CEU][hapmap]
rs1997470	0.81[CEU][hapmap]
rs2086612	0.81[CEU][hapmap]
rs2204853	0.81[CEU][hapmap];0.86[GIH][hapmap]
rs41341346	0.81[CEU][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs6755568	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs7568763	0.81[CEU][hapmap]
rs972488	0.81[CEU][hapmap];0.93[GIH][hapmap]
rs972489	0.81[CEU][hapmap];0.86[GIH][hapmap]
rs999946	0.81[CEU][hapmap];1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1014680	chr2:213142147-213301614	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1505349	MAP2	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213287000-213293400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:213288200-213291800	Weak transcription	Brain Anterior Caudate	brain
3	chr2:213288200-213291800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:213290600-213291800	Weak transcription	Brain Angular Gyrus	brain
5	chr2:213290600-213292600	Enhancers	Brain Germinal Matrix	brain
6	chr2:213290800-213294600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:213290800-213297000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:213291200-213291800	Enhancers	Brain Substantia Nigra	brain
9	chr2:213291200-213292000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr2:213291200-213292000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr2:213291200-213294400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr2:213291200-213294800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:213291400-213291800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr2:213291400-213292800	Enhancers	Brain Hippocampus Middle	brain
15	chr2:213291400-213294600	Enhancers	Cortex derived primary cultured neurospheres	brain

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