Variant report

Variant	rs6755568
Chromosome Location	chr2:213283749-213283750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10193290	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs10197535	0.83[YRI][hapmap]
rs13385225	0.85[EUR][1000 genomes]
rs13387495	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs13408977	0.85[EUR][1000 genomes]
rs13424127	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs1505348	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs1505349	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs16848520	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6757140	0.82[YRI][hapmap]
rs7564771	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1014680	chr2:213142147-213301614	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1003694	chr2:213216431-213290523	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2763101	chr2:213248318-213290535	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213280000-213284800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:213281000-213285200	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:213281600-213286200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:213282400-213285200	Weak transcription	Brain Anterior Caudate	brain
5	chr2:213282400-213287000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:213282800-213286200	Weak transcription	Brain Angular Gyrus	brain
7	chr2:213283000-213284200	Weak transcription	Brain Substantia Nigra	brain
8	chr2:213283200-213285400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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