Variant report

Variant	rs1505566
Chromosome Location	chr1:225868560-225868561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10915857	1.00[EUR][1000 genomes]
rs1578523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2615059	1.00[EUR][1000 genomes]
rs57267938	1.00[EUR][1000 genomes]
rs58565704	1.00[AMR][1000 genomes]
rs60703299	1.00[AMR][1000 genomes]
rs6426082	1.00[EUR][1000 genomes]
rs6663275	1.00[EUR][1000 genomes]
rs6676277	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146933	1.00[AMR][1000 genomes]
rs74147000	1.00[AMR][1000 genomes]
rs74148663	1.00[AMR][1000 genomes]
rs74149828	1.00[AMR][1000 genomes]
rs74149847	1.00[AMR][1000 genomes]
rs74150521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832725	chr1:225726998-225910121	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832736	chr1:225815717-225968619	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225863800-225868600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:225865400-225872600	Weak transcription	Aorta	Aorta
3	chr1:225865400-225878600	Weak transcription	Right Atrium	heart
4	chr1:225865600-225888000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links