Variant report

Variant	rs6676277
Chromosome Location	chr1:225878780-225878781
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:225871460..225874558-chr1:225874980..225880018,4	MCF-7	breast:
2	chr1:225840016..225842052-chr1:225877902..225879469,2	MCF-7	breast:
3	chr1:225859205..225862111-chr1:225877957..225879915,2	K562	blood:

Variant related genes	Relation type
ENSG00000154380	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10915857	1.00[EUR][1000 genomes]
rs1505566	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1578523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2615059	1.00[EUR][1000 genomes]
rs57267938	1.00[EUR][1000 genomes]
rs58565704	1.00[AMR][1000 genomes]
rs60703299	1.00[AMR][1000 genomes]
rs6426082	1.00[EUR][1000 genomes]
rs6663275	1.00[EUR][1000 genomes]
rs74146933	1.00[AMR][1000 genomes]
rs74147000	1.00[AMR][1000 genomes]
rs74148663	1.00[AMR][1000 genomes]
rs74149828	1.00[AMR][1000 genomes]
rs74149847	1.00[AMR][1000 genomes]
rs74150521	1.00[EUR][1000 genomes]
rs7514958	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832725	chr1:225726998-225910121	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832736	chr1:225815717-225968619	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	esv1795046	chr1:225874059-226091150	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv1834932	chr1:225874059-226091150	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	esv1834948	chr1:225874059-226214882	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225865600-225888000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:225873400-225878800	Weak transcription	Aorta	Aorta
3	chr1:225873600-225879200	Weak transcription	NHDF-Ad	bronchial
4	chr1:225875200-225898600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:225876000-225878800	Weak transcription	Stomach Mucosa	stomach
6	chr1:225876400-225880400	Weak transcription	Lung	lung
7	chr1:225877200-225879000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:225877400-225879000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:225877400-225882600	Enhancers	Osteobl	bone
10	chr1:225877600-225880000	Weak transcription	Gastric	stomach
11	chr1:225877800-225882400	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr1:225878000-225878800	Enhancers	Psoas Muscle	Psoas
13	chr1:225878000-225879000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:225878000-225879000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr1:225878000-225879000	Weak transcription	A549	lung
16	chr1:225878000-225879200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:225878000-225879200	Weak transcription	Ovary	ovary
18	chr1:225878000-225881000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr1:225878000-225882600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:225878000-225883000	Weak transcription	NHEK	skin
21	chr1:225878400-225879000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:225878400-225881000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:225878400-225881000	Enhancers	Pancreas	Pancrea
24	chr1:225878600-225879600	Enhancers	Fetal Muscle Trunk	muscle
25	chr1:225878600-225881000	Enhancers	Right Ventricle	heart
26	chr1:225878600-225882400	Enhancers	Adipose Nuclei	Adipose
27	chr1:225878600-225882800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:225878600-225884000	Enhancers	Right Atrium	heart
29	chr1:225878600-225885400	Enhancers	Left Ventricle	heart

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